Online inquiry

5-Methylcytidine Modification Service

Introduction 5-Methylcytidine Modification Workflow What We Can Offer FAQ

Introduction

Our 5-Methylcytidine Modification Service boosts therapeutic efficacy and transcript stability via precision epitranscriptomic engineering. Strategic m5C incorporation modifies RNA structure for superior translation and immune evasion, elevating mRNA performance for next-gen vaccines and therapeutics.

Creative Biolabs' m5C expertise solves mRNA therapy challenges, maximizing protein expression duration/quantity while reducing adverse immune responses, delivering optimized transcripts to accelerate your project.

Discover How We Can Help - Request a Consultation

5-Methylcytidine Modification Service

Schematic diagram of 5-methylcytosine structure.

m5C refers to the addition of a methyl group (CH3) to the C-5 position of the cytosine ring. This seemingly small chemical addition yields profound functional changes. Mechanistically, m5C substitution stabilizes the RNA helix by promoting favorable base stacking and increasing the thermal stability of hydrogen bonds. This superior structural integrity ensures the mRNA resists cleavage and maintains its active conformation longer within the cytoplasm, ready for repeated ribosomal translation.

NA m5C modification refers to the chemical modification where the cytosine residues in RNA molecules are methylated at the carbon 5 position. (OA Literature)Fig.1 RNA m5C modification plays a crucial role in various biological processes.1

Key Advantages for Therapeutic Development

  • Superior Stability: m5C promotes robust base stacking and resists cellular degradation pathways, which extends mRNA half-life—ultimately reducing the frequency of dosing needed to achieve therapeutic effects.
  • Enhanced Translation: By optimizing interactions with ribosomal machinery and minimizing frameshifting, m5C boosts the protein yield per mRNA transcript, effectively enhancing the potency of RNA-based therapeutics.
  • Immune Evasion: m5C modifies the cytidine structure to be recognized as "self" by immune sensors, lowering the body's innate immune response and thereby improving the tolerability of mRNA therapies.

Applications in Modern Medicine

The strategic use of m5C is transforming several high-value therapeutic areas:

  • mRNA Vaccines: Incorporating m5C ensures low systemic inflammation, which is vital for multi-dose and highly targeted vaccine strategies.
  • Oncology Immunotherapy: Delivering modified mRNA encoding cancer antigens or immune modulators to the tumor microenvironment with enhanced stability and low immunogenicity is key to successful immune checkpoint blockade.
  • Protein Replacement Therapy: For rare genetic diseases, m5C-optimized mRNA provides the sustained, high levels of endogenous protein expression required for functional correction.

Workflow

Our robust, multi-stage workflow is designed for transparency and efficiency, ensuring high-quality, clinical-ready deliverables.

Stage Activity Involved
Required Starting Materials Target mRNA sequence/plasmid, desired modification sites or target region, target cell type/therapeutic application (e.g., vaccine, protein replacement).
Project Intake & Design Comprehensive review of client-provided materials and rational design of the epitranscriptomic strategy, including m5C concentration optimization.
Custom Nucleotide Synthesis & Prep Large-scale, high-purity synthesis and purification of m5C nucleotides and other necessary components (e.g., Cap analogues).
IVT & Modification Integration Optimized in vitro transcription reaction incorporating the m5C nucleotides to produce the full-length therapeutic mRNA.
Final Purification & QC Multi-step purification (e.g., HPLC-based) to remove contaminants and comprehensive quality control, including capping efficiency and impurity analysis.

Final Deliverables:

  1. Purified m5C -modified mRNA (batch size specified by client).
  2. Comprehensive QC/Analytical Report detailing purity, integrity (e.g., by capillary electrophoresis), and capping efficiency.
  3. Data on In Vitro Translational Efficacy and preliminary immunogenicity analysis (where applicable).

Estimated Timeframe: The typical timeframe for this service ranges from 4 to 8 weeks, depending on the complexity of the target sequence, the inclusion of combinatorial modifications (Ψ, m6A), and the required batch size.

What We Can Offer

Our Advantage

Custom Epitranscriptomic Design
Comprehensive, rational m5C modification strategy (concentration, placement) fully customized to your therapeutic target and required translational output.

Maximized In Vivo Longevity
Precision m5C incorporation induces favorable base stacking, delivering transcripts with better structural stability and longer therapeutic half-life than conventional mRNA.

Advanced Immune Evasion
Strategic modification helps transcripts evade innate immune sensors (e.g., TLRs), ensuring low systemic inflammation and prolonged protein expression—key for sensitive applications like in vivo cell reprogramming.

Integrated GMP/GLP Manufacturing
One-stop service for high-purity custom m5C nucleoside synthesis and large-scale, clinical-grade m5C-modified mRNA production to speed up IND filing.

Proprietary Analytical Tools
Advanced QC (bisulfite sequencing, mass spectrometry) maps and quantifies m5C sites, ensuring top-tier translational fidelity and product consistency.

End-to-End Delivery Solutions
Seamless integration of m5C expertise with Creative Biolabs' optimized LNP formulation services, offering a complete solution from sequence to targeted delivery.

Experience the Creative Biolabs Advantage - Get a Quote Today

Customer Reviews

  • [Enhanced Stability] Using Creative Biolabs' m5C Modification Service in our protein replacement research significantly improved the shelf-life and in vivo stability of our lead mRNA candidate, moving our project closer to IND submission.

    9 Months Ago, Dr. Julia Marn

  • [Immune Evasion] The combination of m5C and Pseudouridine supplied by Creative Biolabs was crucial for our cancer vaccine platform. It tangibly reduced TLR activation in dendritic cells, which was essential for a non-inflammatory therapeutic profile.

    5 Months Ago, Prof. Samuel Wilson

  • [Complexity Handling] We had a complex, large transcript and needed precise, high-purity m5C incorporation. Creative Biolabs' detailed analytical report gave us confidence that the translational fidelity was maintained, far surpassing our previous internal synthesis results.

    2 Months Ago, Dr. Ana Garcia

FAQs

Q: Why do I need m5C if I already use Pseudouridine (Ψ) in my mRNA?

A: Ψ excels at immune evasion, while m5C boosts structural stability and translation fidelity via unique base-stacking. Combining them creates synergy, optimizing immune stealth and protein output. Consult us for a tailored combinatorial strategy.

Q: How does Creative Biolabs ensure the m5C modification is correctly incorporated throughout the transcript?

A: We use proprietary IVT protocols for high-efficiency incorporation. Final QC uses bisulfite sequencing and mass spectrometry to confirm m5C presence, distribution, and transcript integrity.

Q: Are there any specific cell lines or applications where m5C is particularly effective compared to unmodified mRNA?

A: m5C works universally but shines in interferon-sensitive cells (e.g., dendritic cells, macrophages)—key for cancer immunotherapy/vaccines—significantly boosting translational yield in these targets.

Q: How does Creative Biolabs' m5C service compare to other providers offering generic modified nucleotides?

A: We offer end-to-end epitranscriptomic engineering (rational design, proprietary synthesis, integrated QC/delivery) vs. just reagents. Over 20 years of expertise ensure a higher-performing final product.

Creative Biolabs' 5-Methylcytidine Modification Service is your essential tool for advancing next-generation mRNA therapeutics. We combine deep scientific expertise with a detailed, high-quality workflow to deliver modified transcripts with maximized stability, reduced immunogenicity, and superior translational efficiency.

Contact Our Team for More Information and to Discuss Your Project

Hot IVT Vectors

Cat. No Product Name Promoter
CAT#: GTVCR-WQ001MR IVTScrip™ pT7-mRNA-EGFP Vector T7
CAT#: GTVCR-WQ002MR IVTScrip™ pT7-VEE-mRNA-EGFP Vector T7
CAT#: GTVCR-WQ003MR IVTScrip™ pT7-VEE-mRNA-FLuc Vector T7
CAT#: GTVCR-WQ87MR IVTScrip™ pT7-VEE-mRNA-Anti-SELP, 42-89-glycoprotein Vector T7

Hot IVTScrip™ mRNA Transcript

Cat. No Product Name Type
CAT#: GTTS-WQ001MR) IVTScrip™ mRNA-EGFP (Cap 1, 30 nt-poly(A)) Reporter Gene
CAT#: GTTS-WK18036MR IVTScrip™ mRNA-Human AIMP2, (Cap 1, Pseudo-UTP, 120 nt-poly(A)) Enzyme mRNA
(CAT#: GTTS-WQ004MR) IVTScrip™ mRNA-Fluc (Cap 1, 30 nt-poly(A)) Reporter Gene
(CAT#: GTTS-WQ009MR) IVTScrip™ mRNA-β gal (Cap 1, 30 nt-poly(A)) Reporter Gene

Reference

  1. Chen, Xi, et al. "RNA m5C modification: from physiology to pathology and its biological significance." Frontiers in Immunology 16 (2025): 1599305. https://doi.org/10.3389/fimmu.2025.1599305. Distributed under Open Access license CC BY 4.0, without modification.
All products and services are For Research Use Only and CANNOT be used in the treatment or diagnosis of disease.